BacPathGenomics

Genomics and evolution of bacterial pathogens

Main menu

Skip to content
  • About
  • Learning bacterial genomics & bioinformatics
  • Software

Search

Monthly Archives: June 2012

June 21, 2012

Whole-genome sequencing for investigating hospital outbreaks

A couple of papers have come out this month demonstrating the use of whole genome sequencing (using the Illumina MiSeq) for investigating hospital outbreaks in the UK.

Continue reading →

  • Posted in Bacterial genomics
  • Tagged miseq outbreak hospital papers
  • 1 Comment

Post navigation

Tags

assembly bacteria bacterial communities bacterial genomics bacterial populations biofilm bla chromosome circular creative commons data data storage e. coli EBI event genome comparison genomics inci ion torrent lectures mapping metagenomics mlst mutation NCBI NGS open access outbreak papers phage phylogenetics plasmid reads resistance search sequencing snp software SRA tools trees tutorials typhoid typing visualization

Latest posts

  • Get coverage stats for a LOT of reference sequences
  • Bacterial genomics tutorial
  • Creating Pubmed RSS feeds
  • Human Microbiome Analysis – PLoS Computational Biology eBook
  • Colouring in country maps

About me

My name is Kat Holt and I'm a research fellow at the University of Melbourne, Australia. My publications are here. Interested research students can contact me here.

Top Posts & Pages

  • SNP-base phylogeny confirms similarity of E. coli outbreak to EAEC Ec55989
  • Displaying data associated with phylogenetic trees
  • Learning resources for bacterial genomics
  • Bacterial genomics tutorial
  • NCBI's new Microbial genome BLAST

E. coli outbreak analysis

Collection of my posts
Other's posts on the Github Wiki

Archive

  • April 2013 (2)
  • February 2013 (3)
  • January 2013 (1)
  • November 2012 (1)
  • September 2012 (1)
  • August 2012 (1)
  • July 2012 (1)
  • June 2012 (1)
  • May 2012 (1)
  • October 2011 (4)
  • September 2011 (2)
  • July 2011 (1)
  • June 2011 (24)
  • May 2011 (1)
  • April 2011 (2)
  • March 2011 (1)

Open access journals

  • About Open Access
  • BioMedCentral
  • Genome Biology
  • PLoS Biology
  • PLoS Computational Biology
  • PLoS Genetics
  • PLoS Medicine
  • PLoS Neglected Tropical Diseases
  • PLoS One
  • PLoS Pathogens

Enter your email to receive new posts in your inbox.

Search this blog

Meta

  • Register
  • Log in
  • Entries RSS
  • Comments RSS
  • WordPress.com
Blog at WordPress.com. | Theme: Splendio by DesignDisease.
Follow

Get every new post delivered to your Inbox.

Join 33 other followers

Powered by WordPress.com